Hi Saman
Recon-all will give you a comprehensive assessment of most macroscopically visible structures in the brain. You don’t have to convert to nifty first – just point recon-all at a single slice in the proper dicom series (for your 3D T1-weighted scan), and it will spend a few hours doing stuff
Cheers Bruce
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of saman fouladi Sent: Tuesday, October 20, 2020 4:12 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] please help me
External Email - Use Caution hi
I want to process MRI images to extract Morphology features.
I convert my dcm file to nii format by mri-convert command and then I used FSL software and BET(Best extraction Tool).
Next I do not know what to do to extract morphological features?
My other question is what is the difference between recon-all and use FEAT( in FSL software)? What are the uses of each?
Thank you