Not sure. Can you upload the set to
https://gate.nmr.mgh.harvard.edu/filedrop2
and I'll take a look
On 01/10/2017 03:31 PM, Caleb Comoglio wrote:
Hello,
I am having trouble with the MRI_convert portion of recon-all. I get the error below when I run recon-all and when I run MRI_convert independently of recon-all.
WARNING: file Desktop/3T_20161201_131733544/MR000004 does not contain a Siemens ASCII header
has this file been anonymized?
ERROR: cannot unpack mosiacs without ASCII header
Prior to getting the error I get the following message:
Scanning Directory
INFO: Found 2316 files in Desktop/3T_20161201_131733544
INFO: Scanning for Series Number 2
INFO: found 192 files in series
INFO: loading series header info.
INFO: sorting.
RunNo = 1
WARNING: Run 1 appears to be truncated
Files Found: 192, Files Expected (lRep+1): 1
Do you have any suggestions? Additional system info is below:
- OS: MacOS Sierra (10.12.2)
- FS software version: freesurfer-Darwin-lion-stable-pub-v5.3.0
- Data is MPRAGE directly from a siemens machine
*Caleb C. Comoglio, BSBME
Graduate Research Fellow Bioelectronics Laboratory, IUPUI ccomogli@iupui.edu mailto:ccomogli@iupui.edu (574) 727-1620
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