External Email - Use Caution
Hi all,
Thank you for all your amazing work! I started using FreeSurfer recently and there are a couple of questions I was hoping someone here might be able to help me with:
1. Does anyone know of any way to silence recon-all's output or redirect it to stdout when called programmatically through nipype? I tried a couple of different approaches (using python's os.devull and creating a fake file-handle that does nothing on write() calls), but I can't seem to be able to get rid of it. Also, and I apologize if it exists and I simply missed it, I think it would be great to simply add a --quiet flag or something of the sort, considering the output is anyhow saved to a log file. 2. Is there any more documentation on recon-all's output other that the ReconAllOutputFiles https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllOutputFiles page? I've noticed a lot of info is missing there. I would be more than happy to contribute to it myself but I'm not sure what resources I can use to gather more information, and also I'm having trouble finding the corresponding documentation files on GitHub.
Thanks again and all the best! Zvi