Hello,
I'm running recon-all on a second set of data. It ran smoothly until
mpr2mni305 success
and then it gave the following: --------------------------------------------
tkregister2_cmdl --mov nu.mgz --targ /usr/local/freesurfer/average/mni305.cor.mgz --xfmout transforms/talairach.auto.xfm --vox2vox talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt --noedit --reg talsrcimg.reg.tmp.dat tkregister_tcl /usr/local/freesurfer/lib/tcl/tkregister2.tcl Vox2Vox Matrix -0.003 -0.077 0.242 71.612; 0.001 0.055 -0.022 129.085; -0.004 -0.904 1.028 97.306; 0.000 0.000 0.000 1.000; target volume /usr/local/freesurfer/average/mni305.cor.mgz movable volume nu.mgz reg file talsrcimg.reg.tmp.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.86.2.12 2009/03/19 22:04:20 greve Exp $ Diagnostic Level -1 INFO: loading target /usr/local/freesurfer/average/mni305.cor.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable nu.mgz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- -0.003 -0.242 -0.077 35.722; 0.004 1.028 0.904 -15.429; 0.001 0.022 0.055 -5.367; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- -0.003 -0.242 -0.077 35.722; 0.004 1.028 0.904 -15.429; 0.001 0.022 0.055 -5.367; 0.000 0.000 0.000 1.000; Determinant -0.000168945 subject = subject-unknown RegMat --------------------------- -0.003 -0.242 -0.077 35.722; 0.004 1.028 0.904 -15.429; 0.001 0.022 0.055 -5.367; 0.000 0.000 0.000 1.000; register: file talsrcimg.reg.tmp.dat written `talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt' -> `transforms/talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt' removed `talsrcimg.4dfp.hdr' removed `talsrcimg.4dfp.ifh' removed `talsrcimg.4dfp.img' removed `talsrcimg.4dfp.img.rec' removed `talsrcimg.hdr' removed `talsrcimg.img' removed `talsrcimg.mat' removed `talsrcimg.reg.tmp.dat' removed `talsrcimg_g11.4dfp.hdr' removed `talsrcimg_g11.4dfp.ifh' removed `talsrcimg_g11.4dfp.img' removed `talsrcimg_g11.4dfp.img.rec' removed `talsrcimg_to_711-2C_as_mni_average_305_t4'
--------------------------------------------
Wed Mar 3 13:43:27 GMT 2010 talairach_avi done
cp transforms/talairach.auto.xfm transforms/talairach.xfm
#-------------------------------------------- #@# Talairach Failure Detection Wed Mar 3 13:43:28 GMT 2010 /home/s0964091/Desktop/Newdata/JS/mri
talairach_afd -T 0.005 -xfm transforms/talairach.xfm
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) Linux CRIC-0012 2.6.31-19-generic #56-Ubuntu SMP Thu Jan 28 02:39:34 UTC 2010 x86_64 GNU/Linux
recon-all exited with ERRORS at Wed Mar 3 13:43:28 GMT 2010
I don't understand this error. Please let me know what I can do to fix this. Thank you Jan