hi bruce and others:
i'm getting a recon failure on this particular brain: H0351.1009
the quality isn't great, but if you can take a quick look at the brain to see if you can spot any particular issues, that would be great.
4 of the others finished recon and 3 are almost there.
cheers,
satra
data location: http://human.brain-map.org/mri_viewers/data
command: recon-all -subjid H0351.1009 -all -i /data/allen/H0351.1009/T1.nii.gz -openmp 8 -notalairach
==> /data/subjects/H0351.1009/scripts/recon-all-status.log <== status file for recon-all Fri Jul 5 00:02:39 UTC 2013 #@# MotionCor Fri Jul 5 00:02:43 UTC 2013 #@# Nu Intensity Correction Fri Jul 5 00:02:57 UTC 2013 #@# Intensity Normalization Fri Jul 5 00:04:45 UTC 2013 #@# Skull Stripping Fri Jul 5 00:07:53 UTC 2013 Linux node007 3.2.0-39-virtual #62-Ubuntu SMP Thu Feb 28 00:48:27 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s H0351.1009 exited with ERRORS at Fri Jul 5 00:16:26 UTC 2013