Yes, part of the skull is still there. Please see screenshot. Best, Paul
[image: Inline image 2]
On Wed, Apr 19, 2017 at 1:49 PM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
Did you check whether there was something else attached? Eg, a big piece of skull, etc.?
On 04/19/2017 01:23 PM, miracle ozzoude wrote:
Hello Doug, No, the cerebellum has been removed. Best, Paul
On Wed, Apr 19, 2017 at 1:13 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
Did you check to see whether cerebellum as still attached in the wm.mgz file? On 04/18/2017 09:06 PM, miracle ozzoude wrote: > > ---------- Forwarded message ---------- > From: *miracle ozzoude* <miracooloz@gmail.com <mailto:miracooloz@gmail.com>
> <mailto:miracooloz@gmail.com <mailto:miracooloz@gmail.com>>> > Date: Mon, Apr 17, 2017 at 8:40 AM > Subject: fix topology problem > To: Douglas N Greve <freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu> > <mailto:freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu>>> > > > Hello freesurfer, > I am running recon-all on a scan and for the past 4 days, it hasn't > finished the fix topology step of recon-all. I have attached the > recon.log in the email. Thanks > Best, > Paul > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> Phone Number: 617-724-2358 <tel:617-724-2358> Fax: 617-726-7422 <tel:617-726-7422> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 <https://gate.nmr.mgh.harvard.edu/filedrop2> www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
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Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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