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Hi there,
I’ve been trying run recon-all on this public dataset https://secure-web.cisco.com/13AIuH-XEB3a4SQgLqeatTFX2txFlVseSmTdhYjjSnmJ3KG... and I cant seem to complete the autorecon3 stage for any of the subjects. I’ve attached the log file.
I’m using freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b
#-------------------------------------------- #@# BA_exvivo Labels lh Mon Jan 9 05:39:18 +08 2023 ------------------------------------------------------------------------- ERROR: Label BA1_exvivo does not exist in SUBJECTS_DIR fsaverage! The fsaverage link probably points to an older freesurfer version ------------------------------------------------------------------------- Linux hpc-gekko1 3.10.0-693.el7.x86_64 #1 SMP Tue Aug 22 21:09:27 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s sub-A00000300 exited with ERRORS at Mon Jan 9 05:39:18 +08 2023
I’ve also tried to recon-all with freesurfer 7.3.2. however I got stuck at the autorecon2 stage instead
ERROR: cannot find or read transforms/talairach.m3z error: No such file or directory error: transforms/talairach.m3z: could not open transform
I’m wondering if there is anything wrong with the data? The input file can be downloaded here https://secure-web.cisco.com/1kuOf_Y-BPoVdkGgGQL_IV4l7nF5eQ5cy4kb3Lu9CxxDEaZ...
Thanks Junhong ________________________________
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