Re: [Freesurfer] asegstat values pre and post editing

Hi Claudia

if you run autorecon2 you will rerun the aseg, which will use the control points to change the subcortical intensity normalization. If you don't want that to happen, you need to run -autorecon2-cp

cheers Bruce

On Wed, 24 Jul 2013, Claudia Dacquino wrote:

Dear Freesurfers,we recently processed a sample of adult patients and then we reran autorecon-2 and autorecon-3 after editing contol points, white matter and pial surface. We exported the asegstat table both pre and post editing, and we got different volumes for most of the subjects. How is that possible, given that the kind of editing we performed is not supposed to affect subcortical segmentation? Thanks a lot. Claudia