Dear List
Just to say that the below error turned out to be a problem with my pathdef.m file.
Very best,
Lisa
On Mon, Apr 4, 2011 at 4:24 PM, Lisa Ronan lisa.ronan@gmail.com wrote:
Dear List
I have recently come up agains the same problem as described below, namely the error when I compute lGI reads
reading filled volume...
closing volume... ??? Undefined function or method 'fspecial' for input arguments of type 'char'. Error in ==> make_outer_surface at 31 Gaussian = fspecial('gaussian',[2 2],1);
ERROR: make_outer_surface did not create output file ....
I have tried re-running the subject (as recommended below), as well as looking at any output from the mris_compute_lgi -debug flag directly, but the error is the same (Note I am trying to process subjects on a linux computer, and have verified that the same subject runs successfully on a Mac).
I'd appreciate any suggestions you might have,
Thanks in advance,
Lisa
On Wed, Sep 24, 2008 at 7:18 PM, Martin Kavec martin.kavec@gmail.comwrote:
Hi Jenifer,
I don't know what the error exactly means, but sometimes just re-running the analysis helps.
Best,
Martin
On Wednesday 24 September 2008 19:24:40 Juranek, Jenifer wrote:
Hi, Encountering some difficulties with LGI on a RHEL4 box (64bit) with
MATLAB
v7.6.0.324 (R2008a) installed. Subject was processed under fsv405.
Specific
error is pasted below:
Any suggestions to correct my error?
Thanks, Jenifer
reading filled volume...
closing volume... ??? Undefined function or method 'fspecial' for input arguments of type 'char'.
Error in ==> make_outer_surface at 31 Gaussian = fspecial('gaussian',[2 2],1);
ERROR: make_outer_surface did not create output file 'tmp-mris_compute_lgi-lh.pial/lh.pial-outer'! Linux
localhost.localdomain
2.6.9-5.ELsmp #1 SMP Wed Jan 5 19:29:47 EST 2005 x86_64 x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Wed Sep 24 11:51:01 CDT 2008
[jjuranek@localhost jjuranek_fsv405]$
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer