hi doug,
thank you so much for your quick reply.
yes - I saw this error after I sent you the error log. I checked the paradigm file, corrected it and rerun everything.
now this error is gone but I still get the following:
Error using svd Input to SVD must not contain NaN or Inf.
Error in cond (line 36) s = svd(A);
Error in fast_selxavg3 (line254) XCond = cond(XtX);
- — - - — - - — - — -
EROOR: fast_selxavg3() failed\n
Your help is much appreciated
On Dec 9, 2015, at 1:57 PM, Douglas N Greve <greve@nmr.mgh.harvard.edumailto:greve@nmr.mgh.harvard.edu> wrote:
Did you see the error description:
ERROR: /space/mdeh5/1/halgdev/projects/christina/FSFAST/Project/NC211_fmri_060515/Sess01/bold/004/oddeven.par is not correctly formatted. Line 19 only has 0 items
did you check this file?
On 12/09/2015 12:38 PM, Christina Pressl wrote: Dear Freesurfer Experts,
I am having trouble with selxavg3-sess and was wondering if you could maybe help me resolving the issue (error log attached)
I ran
#preproc-sess –s Sess01 –surface fsaverage lhrh –mni305 –fwhm 5 –per-run
and the following commands for lh, rh and mni305
#mkanalysis-sess –fsd bold –stc up -surface fsaverage lh -fwhm 5 -event-related -paradigm oddeven.par -nconditions 3 -spmhrf 0 -TR 2 -refeventdur 10.750 -nskip 4 –mcextreg -polyfit 2 -analysis oddeven.sm5.lh
#mkcontrast-sess –analysis oddeven.sm5.lh –contrast face-vs-object –a 1 –c 2 –c 3
#mkcontrast-sess –analysis oddeven.sm5.lh –contrast face-vs-fix –a 1 –c 0
Thank you very much.
Christina
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