Freesurfers --
Here's the output of my terminal...
kerryave:functionals $ cd /cluster/kuperberg/SemPrMM/MRI/functionals/ kerryave:functionals $ rm /cluster/kuperberg/SemPrMM/MRI/functionals/ya24/scripts/atlloc_fs-stats.log kerryave:functionals $ selxavg3-sess -analysis ya.ATLLoc.spm.sm8.lh -s ya24 -d /cluster/kuperberg/SemPrMM/MRI/functionals/ -svres -nolog Surface data fsaverage lh -------------------------------------------------------------- selxavg3-sess logfile is /dev/null -------------------------------------------------------------- ------------------------------------------- /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24 Fri Apr 8 16:47:17 EDT 2011 anadir = /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24/ATLLoc/ya.ATLLoc.spm.sm8.lh ERROR: cannot find /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24/ATLLoc/007/fmcpr.odd.sm8.fsaverage.lh.nii.gz kerryave:functionals $ ls -l ya24/ATLLoc/007/fmcpr.odd.sm8.fsaverage.lh.nii.gz -rw-rw-r-- 1 sburns lingua 83660305 Apr 7 07:56 ya24/ATLLoc/007/fmcpr.odd.sm8.fsaverage.lh.nii.gz
Does anyone know what's going on? Here's my analysis.info for that analysis...
kerryave:functionals $ cd ya.ATLLoc.spm.sm8.lh/ kerryave:ya.ATLLoc.spm.sm8.lh $ cat analysis.info # FSBUILD freesurfer-Linux-centos4_x86_64-stable-v5.0.0-20110319 # MKAVERSION $Id: mkanalysis-sess,v 1.49.2.8 2011/01/18 17:08:22 greve Exp $ # MKACMD /usr/local/freesurfer/stable5_0_0/fsfast/bin/mkanalysis-sess -analysis ya.ATLLoc.spm.sm8.lh -fsd ATLLoc -rlf rlf -p atlloc.par -spmhrf 0 -refeventdur 2 -event-related -TR 2 -nconditions 4 -mcextreg -hpf 128 -funcstem fmcpr.odd.sm8.fsaverage.lh.nii.gz -surface fsaverage lh -force # DATE Fri Apr 8 08:31:01 EDT 2011
analysis ya.ATLLoc.spm.sm8.lh mcstem fmcpr funcstem fmcpr.odd.sm8.fsaverage.lh.nii.gz fsd ATLLoc runlistfile rlf TR 2 RegDOF 6 RawSpace surface fsaverage lh mask brain RawFWHM 0 RawSTC none inorm 100 acfbins 30 fixacf 1 acffwhm 20 acfsvd 0 designtype event-related nskip 0 polyfit 2 HPFCutoffHz 128 nconditions 4 parname atlloc.par RefEventDur 2 timewindow 40.000000 prestim 0 TER 0.050000 spmhrf 0 stimulusdelay 0 Condition 1 Condition01 Condition 2 Condition02 Condition 3 Condition03 Condition 4 Condition04 nuisreg mcprextreg 3
Thanks for the help.
Scott Burns Kuperberg Lab Martinos Center for Biomedical Imaging sburns@nmr.mgh.harvard.edu
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