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Hi experts,
We are doing the segmentation of the subfields of the hippocampal and amygdala subfields, brainstem subestructures and thalamic nuclei. When we used segmentHA_T1.sh and segmentThalamicNuclei.sh, 'Command not found' appears.
On the other hand, we used segmentBS.sh and we got the following message: 'Software requires 4 arguments: segmentSFnewT1.sh matlabRuntimeDirectory FShomeDirectory subjectName subjectDir'. But, when we typed 'segmentSFnewT1.sh' we got 'Command not found' again.
Note: We have FS v6.0 and the runtime Matlab 2014b.
best wishes, Marina