Run mri_glmfit-sim --help to get details on the output
On 9/7/2020 12:35 PM, Steve Petersen wrote:
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Dear Freesurfer experts,
I performed group analysis in QDEC in order to compare cortical thickness between two groups using the Monte Carlo Z simulation correction. My question is, where is located the z-score of each significant cluster? Maybe in the second column named as Max?. Below you can find an example. In this case z-scores of the precuneus and the inferior parietal would be 3.422 and 3.926 respectively?
Input /usr/local/freesurfer/subjects/qdec/Untitled/lh-Diff-HC-ad_plus-Intercept-thickness/sig.mgh # Frame Number 0 # srcsubj fsaverage # hemi lh # surface white # group_avg_surface_area 82220 # group_avg_vtxarea_loaded 1 # annot aparc # SUBJECTS_DIR /usr/local/freesurfer/subjects # SearchSpace_mm2 75146 # SearchSpace_vtx 146493 # Bonferroni 0 # Minimum Threshold 2.3 # Maximum Threshold infinity # Threshold Sign abs # AdjustThreshWhenOneTail 1 # CW PValue Threshold: 0.05 # Area Threshold 0 mm^2 # CSD thresh 2.300000 # CSD nreps 10000 # CSD simtype null-z # CSD contrast NA # CSD confint 90.000000 # Overall max 4.16102 at vertex 61133 # Overall min -1.24867 at vertex 155746 # NClusters 2 # FixMNI = 1 # # ClusterNo Max VtxMax Size(mm^2) TalX TalY TalZ CWP CWPLow CWPHi NVtxs WghtVtx Annot 1 3.422 78695 820.44 -11.2 -54.8 49.4 0.00250 0.00190 0.00310 1664 4553.35 precuneus 2 3.926 52042 733.99 -30.8 -66.6 40.7 0.00410 0.00330 0.00490 1190 3620.13 inferiorparietal
Simulation complete.
Thanks in advance.
Best regards,
Steve.
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