21 Jun
2013
21 Jun
'13
12:56 a.m.
Try
mri_convert file.nii --out_orientation LAS file2.nii
doug
On 6/20/13 5:30 AM, Brigitte Dahmen wrote:
Dear Doug, dear freesurfers,
thank you very much! If I'd like to change the orientation (from PSR to LAS), is there a way in Freesurfer to do it? Thanks again!
Best, Brigitte
2013/6/20 Douglas Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu>
If you just want to check the orientation, then you can run mri_info. It will not tell you whether the orientation is correct or not, but neither will fslhd doug On 6/19/13 11:18 AM, Bruce Fischl wrote:Hi Brigette, not sure how you could do this except visually. Bring the images up and verify that the directions that we specify are correct (although of course this isn't possible for L/R unless you have some type of external fiducial marker like a vitamin E tablet) cheers Bruce On Wed, 19 Jun 2013, Brigitte Dahmen wrote:Dear Freesurfer experts, is there a command in Freesurfer to check for correct orientation (LAS vs. PSR) of T1 images (similar to "fslhd" in FSL)? Thank you very much! Brigitte_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.-- Brigitte Dahmen - Benedikt-Schmittmann-Str. 22 - 40479 Düsseldorf / Mariabrunnstr. 42 - 52064 Aachen - 0160-3774566 - mailto: biggida@gmail.com mailto:biggida@gmail.com