Re: [Freesurfer] Registration of MPF to FLASH 3D image

That is the bbregister command. You should look at the output of recon-all

On 1/11/2024 5:37 PM, ERNEST KISSI wrote:

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This what the output shows doing the bbregister.

image.png

On Thu, Jan 11, 2024 at 6:09 PM Fischl, Bruce R.,PHD BFISCHL@mgh.harvard.edu wrote:

A T1-weighted FLASH should work. When you say “it did not work”
what do you mean? Can you give us some details?

Cheers

Bruce

*From:*freesurfer-bounces@nmr.mgh.harvard.edu
<freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *ERNEST KISSI
*Sent:* Thursday, January 11, 2024 3:54 AM
*To:* freesurfer@nmr.mgh.harvard.edu
*Subject:* [Freesurfer] Registration of MPF to FLASH 3D image

*        External Email - Use Caution *

Dear Freesurfer team,

I messaged the team on my MPF map analysis and a suggestion was
made that I register the MPF maps on the T1 MPRAGE images.
However, I did not acquire MPRAGE  but FLASH images.

Can I used those instead ? Again, I tried even using only the T1
FLASH images and it did not work so I am not sure whether the
registration of the MPF maps on it will work or not. Is there
anyway around this?

Thank you.

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