That is the bbregister command. You should look at the output of recon-all
On 1/11/2024 5:37 PM, ERNEST KISSI wrote:
External Email - Use Caution
This what the output shows doing the bbregister.
image.png
On Thu, Jan 11, 2024 at 6:09 PM Fischl, Bruce R.,PHD BFISCHL@mgh.harvard.edu wrote:
A T1-weighted FLASH should work. When you say “it did not work” what do you mean? Can you give us some details? Cheers Bruce *From:*freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *ERNEST KISSI *Sent:* Thursday, January 11, 2024 3:54 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] Registration of MPF to FLASH 3D image * External Email - Use Caution * Dear Freesurfer team, I messaged the team on my MPF map analysis and a suggestion was made that I register the MPF maps on the T1 MPRAGE images. However, I did not acquire MPRAGE but FLASH images. Can I used those instead ? Again, I tried even using only the T1 FLASH images and it did not work so I am not sure whether the registration of the MPF maps on it will work or not. Is there anyway around this? Thank you. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://secure-web.cisco.com/1jckhvpTrSA73ODmCVtEoybTAhNZdfCcRmPbeHhB_NHGE-EQGO6D8yCM9KNJ72_VNnpyXAzlLxslZq01nhND42LequdcbueYPdCgxnlIG5lcyeaawoft4N1DEm_6emSmT_EOs5j7SvD6SvZb2JHT5jR4MQWyQ7n7S9bJEAzlP30Iw8Zi-3yZEa85iRw2Lhc7BofSJQM2yEtfNBFwyZaPxIx0Assbl1Cy02Vw8h_JJz6HUlSltqNK926AOqLsPUMNqTbRPAgV5eRhy4TOc8gVAV89e9zmkrY2CSuZTj62CmNJCtyDA5drAa8oObOV9acmK/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://www.massgeneralbrigham.org/complianceline <https://secure-web.cisco.com/1Er0iWRe92JGe_3oag-k7nmq0IPOBOvUrliMXwrWgcwooww5SY5oOXfyTEnsaKo6uNBxUwttJZR53znD32i86dv8HhXFxlR_ojSSYup1X5uWi7SH4mEBeGLE-GUWEZ-KMSwrctFCua5bqjEaH2uY-U-GR-3oudL56golx2WaFqDcswS53uULiNmEgHgl3EdqRKhJ5lLOBrF1Qz9oMkhjWdP5rFEj_c8H4Icy2Cj8ShMG7nhM4q9GCofvJED20klw2Qd_TR893Sgl_xRI3z9bo0B7uwihT7pd5C9fyUBWVD7gcNJclHEPf7YKeDTb7JSOc/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> <*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://www.massgeneralbrigham.org/complianceline <https://secure-web.cisco.com/1Er0iWRe92JGe_3oag-k7nmq0IPOBOvUrliMXwrWgcwooww5SY5oOXfyTEnsaKo6uNBxUwttJZR53znD32i86dv8HhXFxlR_ojSSYup1X5uWi7SH4mEBeGLE-GUWEZ-KMSwrctFCua5bqjEaH2uY-U-GR-3oudL56golx2WaFqDcswS53uULiNmEgHgl3EdqRKhJ5lLOBrF1Qz9oMkhjWdP5rFEj_c8H4Icy2Cj8ShMG7nhM4q9GCofvJED20klw2Qd_TR893Sgl_xRI3z9bo0B7uwihT7pd5C9fyUBWVD7gcNJclHEPf7YKeDTb7JSOc/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline>> .
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