Hi Letitia,
Can you send the full command lines that you ran and the output?
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Schneider, Letitia Maria Sent: Thursday, March 14, 2024 10:43 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] mri_label2vol fillribbon issue
External Email - Use Caution Hello,
I am using Freesurfer version 7.3.2 on a mac. I am using the mri_label2vol function to project an anatomical label into volume space, but I realised the label comes out wrong when I use the --fill-ribbon flag: its orientation changes to RSP. The same label comes out right when I use the --fillthresh flag (oriented in RPI). Any idea why using --fillribbon changes the orientation?
Thank you in advance.
Best wishes, Letitia