Re: [Freesurfer] bbregister- switched coronal and axial views error

What version of FS are you using? If before 6.0 (eg, 5,3), then it may be an error with the initialization. This is much improved in version 6.

On 6/18/2019 5:38 PM, Wenzhen Zhao wrote:

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Dear list,

After running preproc-sess on fmri data, bbr-sum was 0.94. After looking through images of template.nii.gz with register.dof6.lta file, I found that coronal and axial views of template(w/ registration applied) are switched.

$preproc-sess -s sess01 -fsd rest -surface fsaverage lhrh -mni305 -fwhm 5 -per-run

Is there any possible error that I might have made? or is there any way to fix it?

I appreciate your help!

Thanks, Wenzhen

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