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Dear Douglas,
Thanks a lot for your reply! That's very clear!
Best,
Chao-Gan
On Tue, Nov 20, 2018 at 10:12 AM Greve, Douglas N.,Ph.D. < DGREVE@mgh.harvard.edu> wrote:
On 11/16/18 7:34 PM, YAN Chao-Gan wrote:
External Email - Use CautionDear freesurfer experts,
I have a pretty naive question but would like to confirm.
When we use --3spaces option in multiple comparison correction, does that mean we set the Cluster-wise threshold (cwp, not Cluster Defining Threshold or Cluster Forming Threshold) to 0.5/3=0.0167 for lh. Similar cwp at 0.0167 for rh and subcortical?
Correct.
In addition, if we use "--cortex" to restrict the calculation on cortex only, where can we find the corresponding mask or label file for cortex?
Load the ?h.cortex.label in fsaverage
Thanks,
Chao-Gan
-- Chao-Gan YAN, Ph.D. Professor, Principal Investigator Deputy Director, Magnetic Resonance Imaging Research Center Institute of Psychology, Chinese Academy of Sciences 16 Lincui Road, Chaoyang District, Beijing 100101, China
Initiator http://rfmri.org/DPARSFDPABI http://rfmri.org/DPABI http://rfmri.org/DPARSF, http://dpabi.orgDPARSF http://rfmri.org/DPARSF, PRN http://rfmri.org/PRN and The R-fMRI Network http://rfmri.org (RFMRI.ORG http://rfmri.org/) http://rfmri.org/yan http://scholar.google.com/citations?user=lJQ9B58AAAAJ
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