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Thanks Dr. Greve, actually I was using --bg 2 in my command line. Removing --bg has now speeded up the process.
Thanks again for your help.
Regards, Sahil
On Thu, Dec 6, 2018 at 12:04 PM Greve, Douglas N.,Ph.D. < DGREVE@mgh.harvard.edu> wrote:
I think something is wrong if you only have 45 subjects, it should not take that long. Can you send your mri_glmfit command line and the terminal output of mri_glmfit-sim?
On 12/06/2018 01:14 PM, Sahil Bajaj wrote:
External Email - Use CautionDear Dr. Greve,
I have 45 subjects as input. SLURM is also a parallel processing pipeline similar to PBS, Grid Engine, or Condor: https://en.wikipedia.org/wiki/Slurm_Workload_Manager I am not sure how can I speed up the mri_glmfit-sim processing.
Thanks !
On Thu, Dec 6, 2018 at 11:07 AM Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu mailto:DGREVE@mgh.harvard.edu> wrote:
I don't know what Slurm is, so I guess the answer is no. If you have multiple processors on your machine, you can use the --bg option. In general, I have not seen it take that long to run. How many input subjects do you have? On 12/06/2018 12:55 PM, Sahil Bajaj wrote: > > External Email - Use Caution > > Hello experts, > > I was trying to run mri_glmfit-sim --glmdir XY.glmdir --perm 1000 1.3 > abs --cwp 0.05 --2spaces command, but its taking forever even if I > reduce # of permutations from 1000 to 10. > > I was just wondering if there’s a version of FreeSurfer for Slurm > parallel processing clusters. > > Thanks ! > Sahil > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
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