Dear Freesurfer developers,
I would like to perform an analysis that requires me to have all of my subjects surface based and diffusion data in the same space.
I have performed recon-all -qcache so that all my surface based measures are in fsaverage space.
I now would like to register the FA.nii and MD.nii images to fsaverage space as well.
Could you please provide me some command line examples to perform this? I am unsure if I should be using mri_vol2vol or mri_cvs_register.
Thank you for your support.
Best, Derek
________________________________
Derek Sayre Andrews, MSc PhD Candidate
The Sackler Institute for Translational Neurodevelopment
Department of Forensic and Neurodevelopmental Sciences
Institute of Psychiatry, Psychology & Neuroscience, King's College London
Telephone: +44 (0)20 7848 5701 Email: Derek.Andrews@kcl.ac.uk