Hi,
I am accessing my subject directory on a network attached drive. When I run mri glmfit it segfaults. However, it works if the subject directory is on my own computer. Do you have any way to do this with the subject directory on the network drive?
Below is a sample output.
Thanks, Allie
Caduceus:~/ammonis/fsSubjects/subjects_archive> mri_glmfit --y lh.smoothed.thickness.6.mgz --fsgd GDF1.txt doss --glmdir lh.smoothed.thickness.6.glmdir --surf fsaverage lh --C ContrastAge.txt gdfReadHeader: reading GDF1.txt INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. Continuous Variable Means (all subjects) 0 Age 40.0625 1 PCS 9.875 2 Neuro 17.8125 3 Extro 30 4 Open 28.875 5 Agree 32.4375 6 Consc 34.625 Class Means of each Continuous Variable 1 Control 40.0625 9.8750 17.8125 30.0000 28.8750 32.4375 34.6250 INFO: gd2mtx_method is doss Reading source surface /media/AMMONIS/fsSubjects/subjects_archive/fsaverage/surf/lh.white reading group avg surface area 822 cm^2 from file Reading in average area /media/AMMONIS/fsSubjects/subjects_archive/fsaverage/surf/lh.white.avg.area.mgh Number of vertices 163842 Number of faces 327680 Total area 65416.648438 AvgVtxArea 0.399267 AvgVtxDist 0.721953 StdVtxDist 0.195470
$Id: mri_glmfit.c,v 1.138.2.15 2009/07/27 17:43:10 greve Exp $ cwd /media/AMMONIS/fsSubjects/subjects_archive cmdline mri_glmfit --y lh.smoothed.thickness.6.mgz --fsgd GDF1.txt doss --glmdir lh.smoothed.thickness.6.glmdir --surf fsaverage lh --C ContrastAge.txt sysname Linux hostname Caduceus machine x86_64 user arosen FixVertexAreaFlag = 1 UseMaskWithSmoothing 1 OneSampleGroupMean 0 y /media/AMMONIS/fsSubjects/subjects_archive/lh.smoothed.thickness.6.mgz logyflag 0 usedti 0 FSGD GDF1.txt glmdir lh.smoothed.thickness.6.glmdir IllCondOK 0 DoFFx 0 Creating output directory lh.smoothed.thickness.6.glmdir Segmentation fault