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I made a new qdec file in my subject directory (not capitalizing 'qdec') and the problem was solved :)
Thank you so much. I really appreciate all your help
Avi
On Tue, Apr 23, 2019 at 2:57 PM Pan Yunzhi wopanyunzhi@gmail.com wrote:
External Email - Use CautionYou should edit your .Qdecrc file in your SUBJECTS_DIR/qdec folder. Don't capitalize qdec.
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*From: *Avi Gharehgazlou avighareh@gmail.com *Sent: *Tuesday, April 23, 2019 2:27 PM *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject: *Re: [Freesurfer] LGI in QDEC menu please respond soon
External Email - Use Caution *Where should I type "ctrl +H"? In my linux terminal (in QDEC) folder? when I do that it gives this error: bash: ctrl + H: command not found
When I open my .Qdecrc file (with geddit) I see the MEASURE1 = pial_lgi in the file (but not all the other lines that came in the output when I wrote command more ~/.Qdecrc)
On Tue, Apr 23, 2019 at 1:38 PM Pan Yunzhi wopanyunzhi@gmail.com wrote:
External Email - Use Caution *I guess the .Qdecrc file have already in your qdec folder. Try “ctrl + H” to see the hiden file and write MEASURE1 = pial_lgi into .Qdecrc file.
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*From: *Avi Gharehgazlou avighareh@gmail.com *Sent: *Tuesday, April 23, 2019 1:34 PM *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject: *Re: [Freesurfer] LGI in QDEC menu please respond soon
External Email - Use Caution *Yes I did
On Tue, Apr 23, 2019 at 12:59 PM Pan Yunzhi wopanyunzhi@gmail.com wrote:
External Email - Use Caution *Did you run this command “recon-all -s my_subject_id -qcache -measure pial_lgi” before？ If not， you should run this.
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*From: *Avi Gharehgazlou avighareh@gmail.com *Sent: *Tuesday, April 23, 2019 12:06 PM *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject: *[Freesurfer] LGI in QDEC menu please respond soon
External Email - Use Caution *Hi experts,
To give more detail re my previous post.... I have created the .Qdecrc file in my Subjects directory and QDEC folder, which contains one line : MEASURE1 = pial_lgi . However, LGI is still not appearing in the drop down menu on QDEC.
When I do command more ~/.Qdecrc it gives the following output:
# This file is automatically generated by the application
# If you change any lines or add new lines, note that all
# coments and empty lines will be deleted. Every line has
# to be in format:
# key = value
#
Qdec1\Dialogs\ExitApplication = 0
Qdec1\Dialogs\SendErrorLog = 0
Qdec1\Geometry\MainPanelSize = 375
Qdec1\Geometry\MainPanelVisibility = 1
Qdec1\Geometry\SaveUserInterfaceGeometry = 1
Qdec1\Geometry\SecondaryPanelSize = 250
Qdec1\Geometry\SecondaryPanelVisibility = 0
Qdec1\Geometry\ViewPanelPosition = Right
Qdec1\Geometry\WindowGeometry = 900x700+531+190
Qdec1\RunTime\MostRecentVersionLaunched = 1.5
Qdec1\RunTime\PrintTargetDPI = 100.000000
Qdec1\RunTime\ShowBalloonHelp = 1
Qdec1\RunTime\ShowSplashScreen = 1
Qdec1\RunTime\ToolbarFlatButtons = 1
Qdec1\RunTime\ToolbarFlatFrame = 1
Based on previous archives I think my .Qdecrc was not saved properly because the line in this file (MEASURE1 = pial_lgi) doesn't appear in the above output. I know I have to put this line in the above output, but I can't seem to figure out how. Will you please be able to tell me how I can do this?
Thanks so much
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