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I guess the .Qdecrc file have already in your qdec folder. Try “ctrl + H” to see the hiden file and write MEASURE1 = pial_lgi into .Qdecrc file.

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From: Avi Gharehgazlou Sent: Tuesday, April 23, 2019 1:34 PM To: Freesurfer support list Subject: Re: [Freesurfer] LGI in QDEC menu please respond soon

External Email - Use Caution         Yes I did

On Tue, Apr 23, 2019 at 12:59 PM Pan Yunzhi wopanyunzhi@gmail.com wrote:         External Email - Use Caution         Did you run this command “recon-all -s my_subject_id -qcache -measure pial_lgi” before？ If not， you should run this.   Sent from Mail for Windows 10   From: Avi Gharehgazlou Sent: Tuesday, April 23, 2019 12:06 PM To: Freesurfer support list Subject: [Freesurfer] LGI in QDEC menu please respond soon           External Email - Use Caution         Hi experts,  To give more detail re my previous post....  I have created the .Qdecrc file in my Subjects directory and QDEC folder, which contains one line : MEASURE1 = pial_lgi . However, LGI is still not appearing in the drop down menu on QDEC.    When I do command more ~/.Qdecrc it gives the following output:     # This file is automatically generated by the application # If you change any lines or add new lines, note that all # coments and empty lines will be deleted. Every line has # to be in format:  # key = value # Qdec1\Dialogs\ExitApplication = 0 Qdec1\Dialogs\SendErrorLog = 0 Qdec1\Geometry\MainPanelSize = 375 Qdec1\Geometry\MainPanelVisibility = 1 Qdec1\Geometry\SaveUserInterfaceGeometry = 1 Qdec1\Geometry\SecondaryPanelSize = 250 Qdec1\Geometry\SecondaryPanelVisibility = 0 Qdec1\Geometry\ViewPanelPosition = Right Qdec1\Geometry\WindowGeometry = 900x700+531+190 Qdec1\RunTime\MostRecentVersionLaunched = 1.5 Qdec1\RunTime\PrintTargetDPI = 100.000000 Qdec1\RunTime\ShowBalloonHelp = 1 Qdec1\RunTime\ShowSplashScreen = 1 Qdec1\RunTime\ToolbarFlatButtons = 1 Qdec1\RunTime\ToolbarFlatFrame = 1   Based on previous archives I think my .Qdecrc was not saved properly because the line in this file (MEASURE1 = pial_lgi) doesn't appear in the above output. I know I have to put this line in the above output, but I can't seem to figure out how. Will you please be able to tell me how I can do this? Thanks so much     _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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In .Qdecrc file, you can only see this line, except you add somethings else. If all of these were settled down, it should work. Is there any error in your command windows?

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From: Avi Gharehgazlou Sent: Tuesday, April 23, 2019 2:27 PM To: Freesurfer support list Subject: Re: [Freesurfer] LGI in QDEC menu please respond soon

External Email - Use Caution         Where should I type "ctrl +H"? In my linux terminal (in QDEC) folder? when I do that it gives this error: bash: ctrl + H: command not found

When I open my .Qdecrc file (with geddit) I see the MEASURE1 = pial_lgi in the file (but not all the other lines that came in the output when I wrote command more ~/.Qdecrc)

On Tue, Apr 23, 2019 at 1:38 PM Pan Yunzhi wopanyunzhi@gmail.com wrote:         External Email - Use Caution         I guess the .Qdecrc file have already in your qdec folder. Try “ctrl + H” to see the hiden file and write MEASURE1 = pial_lgi into .Qdecrc file.   Sent from Mail for Windows 10   From: Avi Gharehgazlou Sent: Tuesday, April 23, 2019 1:34 PM To: Freesurfer support list Subject: Re: [Freesurfer] LGI in QDEC menu please respond soon           External Email - Use Caution         Yes I did   On Tue, Apr 23, 2019 at 12:59 PM Pan Yunzhi wopanyunzhi@gmail.com wrote:         External Email - Use Caution         Did you run this command “recon-all -s my_subject_id -qcache -measure pial_lgi” before？ If not， you should run this.   Sent from Mail for Windows 10   From: Avi Gharehgazlou Sent: Tuesday, April 23, 2019 12:06 PM To: Freesurfer support list Subject: [Freesurfer] LGI in QDEC menu please respond soon           External Email - Use Caution         Hi experts,  To give more detail re my previous post....  I have created the .Qdecrc file in my Subjects directory and QDEC folder, which contains one line : MEASURE1 = pial_lgi . However, LGI is still not appearing in the drop down menu on QDEC.    When I do command more ~/.Qdecrc it gives the following output:     # This file is automatically generated by the application # If you change any lines or add new lines, note that all # coments and empty lines will be deleted. Every line has # to be in format:  # key = value # Qdec1\Dialogs\ExitApplication = 0 Qdec1\Dialogs\SendErrorLog = 0 Qdec1\Geometry\MainPanelSize = 375 Qdec1\Geometry\MainPanelVisibility = 1 Qdec1\Geometry\SaveUserInterfaceGeometry = 1 Qdec1\Geometry\SecondaryPanelSize = 250 Qdec1\Geometry\SecondaryPanelVisibility = 0 Qdec1\Geometry\ViewPanelPosition = Right Qdec1\Geometry\WindowGeometry = 900x700+531+190 Qdec1\RunTime\MostRecentVersionLaunched = 1.5 Qdec1\RunTime\PrintTargetDPI = 100.000000 Qdec1\RunTime\ShowBalloonHelp = 1 Qdec1\RunTime\ShowSplashScreen = 1 Qdec1\RunTime\ToolbarFlatButtons = 1 Qdec1\RunTime\ToolbarFlatFrame = 1   Based on previous archives I think my .Qdecrc was not saved properly because the line in this file (MEASURE1 = pial_lgi) doesn't appear in the above output. I know I have to put this line in the above output, but I can't seem to figure out how. Will you please be able to tell me how I can do this? Thanks so much     _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer   _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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I made a new qdec file in my subject directory (not capitalizing 'qdec') and the problem was solved :)

Thank you so much. I really appreciate all your help

Avi

On Tue, Apr 23, 2019 at 2:57 PM Pan Yunzhi wopanyunzhi@gmail.com wrote:

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You should edit your .Qdecrc file in your SUBJECTS_DIR/qdec folder. Don't capitalize qdec.

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*From: *Avi Gharehgazlou avighareh@gmail.com *Sent: *Tuesday, April 23, 2019 2:27 PM *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject: *Re: [Freesurfer] LGI in QDEC menu please respond soon

•    External Email - Use Caution        *
  
  

Where should I type "ctrl +H"? In my linux terminal (in QDEC) folder? when I do that it gives this error: bash: ctrl + H: command not found

When I open my .Qdecrc file (with geddit) I see the MEASURE1 = pial_lgi in the file (but not all the other lines that came in the output when I wrote command more ~/.Qdecrc)

On Tue, Apr 23, 2019 at 1:38 PM Pan Yunzhi wopanyunzhi@gmail.com wrote:

•    External Email - Use Caution        *
  
  

I guess the .Qdecrc file have already in your qdec folder. Try “ctrl + H” to see the hiden file and write MEASURE1 = pial_lgi into .Qdecrc file.

Sent from Mail https://go.microsoft.com/fwlink/?LinkId=550986 for Windows 10

*From: *Avi Gharehgazlou avighareh@gmail.com *Sent: *Tuesday, April 23, 2019 1:34 PM *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject: *Re: [Freesurfer] LGI in QDEC menu please respond soon

•    External Email - Use Caution        *
  
  

Yes I did

On Tue, Apr 23, 2019 at 12:59 PM Pan Yunzhi wopanyunzhi@gmail.com wrote:

•    External Email - Use Caution        *
  
  

Did you run this command “recon-all -s my_subject_id -qcache -measure pial_lgi” before？ If not， you should run this.

Sent from Mail https://go.microsoft.com/fwlink/?LinkId=550986 for Windows 10

*From: *Avi Gharehgazlou avighareh@gmail.com *Sent: *Tuesday, April 23, 2019 12:06 PM *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject: *[Freesurfer] LGI in QDEC menu please respond soon

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Hi experts,

To give more detail re my previous post.... I have created the .Qdecrc file in my Subjects directory and QDEC folder, which contains one line : MEASURE1 = pial_lgi . However, LGI is still not appearing in the drop down menu on QDEC.

When I do command more ~/.Qdecrc it gives the following output:

# This file is automatically generated by the application

# If you change any lines or add new lines, note that all

# coments and empty lines will be deleted. Every line has

# to be in format:

# key = value

#

Qdec1\Dialogs\ExitApplication = 0

Qdec1\Dialogs\SendErrorLog = 0

Qdec1\Geometry\MainPanelSize = 375

Qdec1\Geometry\MainPanelVisibility = 1

Qdec1\Geometry\SaveUserInterfaceGeometry = 1

Qdec1\Geometry\SecondaryPanelSize = 250

Qdec1\Geometry\SecondaryPanelVisibility = 0

Qdec1\Geometry\ViewPanelPosition = Right

Qdec1\Geometry\WindowGeometry = 900x700+531+190

Qdec1\RunTime\MostRecentVersionLaunched = 1.5

Qdec1\RunTime\PrintTargetDPI = 100.000000

Qdec1\RunTime\ShowBalloonHelp = 1

Qdec1\RunTime\ShowSplashScreen = 1

Qdec1\RunTime\ToolbarFlatButtons = 1

Qdec1\RunTime\ToolbarFlatFrame = 1

Based on previous archives I think my .Qdecrc was not saved properly because the line in this file (MEASURE1 = pial_lgi) doesn't appear in the above output. I know I have to put this line in the above output, but I can't seem to figure out how. Will you please be able to tell me how I can do this?

Thanks so much

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Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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