Hi Jonathan
so you lose that entire gyrus? What are the intensity values of the wm in the brain.mgz in that region? And it's not present in the wm.mgz either? That means it's a segmentation problem not a topology one (which is what I would have guessed)
Bruce On Fri, 28 Jun 2013, Jonathan Holt wrote:
Hi all, I'm having a bit of trouble with one particular subject for which we brains for 4-5 different time points. The pial surface is consistently misplaced in the same area, see attached main/aux volume images. I'm hesitant to manually replace the white matter myself as I fear it wouldn't be as accurate. Suggestions on other methods to fix this?
The problem is always in the LH temporal right around the lateral inferior ventricle and the fusiform and other subcortical structures.