Hi Corinna,
try to open /home/Documents/longitudinal_morph/meta/test_subject_2ndpostop/mri/orig/001.mgz
in freeview to see if maybe the file is corrupted.
Best, Martin
On 04/25/2014 03:46 PM, Corinna Bauer wrote:
Hello, I am on the recon-all -long step of the longitudinal processing stream and the final time point exits with errors at the mri_convert stage.
mri_convert -at /home/Documents/longitudinal_morph/meta/test_subject_template/mri/transforms/test_subject_2ndpostop_to_test_subject_template.lta -odt uchar -rt cubic /home/Documents/longitudinal_morph/meta/test_subject_2ndpostop/mri/orig/001.mgz /home/Documents/longitudinal_morph/meta/test_subject_2ndpostop.long.test_subject_template/mri/orig.mgz
mghRead(/home/Documents/longitudinal_morph/meta/test_subject_2ndpostop/mri/orig/001.mgz): could not read 262144 bytes at slice 4
I still have plenty of space left on the drive
total used free shared buffers cachedMem: 16348132 14856524 1491608 0 534916 6193928 -/+ buffers/cache: 8127680 8220452 Swap: 16690172 573232 16116940
Any suggestions? The two previous timepoints finished without error.
Corinna
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer