---------- Forwarded message ---------- From: Jordi Delgado jordidem@pic.es Date: 2009/10/30 Subject: FreeSurfer Error: bits = 0 not supported. To: freesurfer@nmr.mgh.harvard.edu
Hello*, * My name is Jordi Delgado, I work with FreeSurfer on a cluster of machines. Yesterday I sent some subjects to process and for three of them I recived in the Output Log from PBS the following message: * Subject Stamp: freesurfer-Linux-centos4-stable-pub-v4.3.1 Current Stamp: freesurfer-Linux-centos4-stable-pub-v4.3.1 INFO: SUBJECTS_DIR is /nfs/arpon/PROJCT/FXTAS/proc/FREESURFER/OutPBS Actual FREESURFER_HOME /nfs/arpon/SOFTWR/freesurfer Linux td172.pic.es 2.6.18-128.7.1.el5 #1 SMP Mon Aug 24 08:12:52 EDT 2009 x86_64 x86_64 x86_64 GNU/Linux /nfs/arpon/PROJCT/FXTAS/proc/FREESURFER/OutPBS/PCC_030
mri_convert /nfs/arpon/PROJCT/FXTAS/orig/DICOM/T13D/PCC_030/PCC_030_0001 /nfs/arpon/PROJCT/FXTAS/proc/FREESURFER/OutPBS/PCC_030/mri/orig/001.mgz
mri_convert /nfs/arpon/PROJCT/FXTAS/orig/DICOM/T13D/PCC_030/PCC_030_0001 /nfs/arpon/PROJCT/FXTAS/proc/FREESURFER/OutPBS/PCC_030/mri/orig/001.mgz $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from /nfs/arpon/PROJCT/FXTAS/orig/DICOM/T13D/PCC_030/PCC_030_0001... Starting DICOMRead2() dcmfile = /nfs/arpon/PROJCT/FXTAS/orig/DICOM/T13D/PCC_030/PCC_030_0001 dcmdir = /nfs/arpon/PROJCT/FXTAS/orig/DICOM/T13D/PCC_030 WARNING: tag ImageNumber not found WARNING: tag image orientation not found Ref Series No = 301 ERROR: bits = 0 not supported. Send email to freesurfer@nmr.mgh.harvard.edu Linux 2.6.18-128.7.1.el5 #1 SMP Mon Aug 24 08:12:52 EDT 2009 x86_64 x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Thu Oct 29 18:26:01 CET 2009*
After revising the freesurfer implementation and verify that other subjects have been processed correctly I noted that three subjects start their slices numeration with 0001 up to 0172 and the rest started (the correctly finished subjects) by 0002 up to 0171. So I searched this error in the freeSurfer wiki and google and I didn't found anything. What is happening? Is an image problem?
Thank you in advance,