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Dear Dr. Greve,
I have 45 subjects as input. SLURM is also a parallel processing pipeline similar to PBS, Grid Engine, or Condor: https://en.wikipedia.org/wiki/Slurm_Workload_Manager I am not sure how can I speed up the mri_glmfit-sim processing.
Thanks !
On Thu, Dec 6, 2018 at 11:07 AM Greve, Douglas N.,Ph.D. < DGREVE@mgh.harvard.edu> wrote:
I don't know what Slurm is, so I guess the answer is no. If you have multiple processors on your machine, you can use the --bg option. In general, I have not seen it take that long to run. How many input subjects do you have?
On 12/06/2018 12:55 PM, Sahil Bajaj wrote:
External Email - Use CautionHello experts,
I was trying to run mri_glmfit-sim --glmdir XY.glmdir --perm 1000 1.3 abs --cwp 0.05 --2spaces command, but its taking forever even if I reduce # of permutations from 1000 to 10.
I was just wondering if there’s a version of FreeSurfer for Slurm parallel processing clusters.
Thanks ! Sahil
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