External Email - Use Caution
Thanks for your answer! The full command line is: mri_convert /indirect/data1/hannah/Test/RESOLVE_3SCAN_TRACE_TRA_P2_160_ADC_0031/MR.MOCO_TRACOLINE_TEST.0031.0001.2021.01.13.12.54.51.790046.85818469.IMA /indirect/data1/hannah/Test/RESOLVE_3SCAN_TRACE_TRA_P2_160_ADC_0031.nii
And the terminal output:
mri_convert /indirect/data1/hannah/Test/RESOLVE_3SCAN_TRACE_TRA_P2_160_ADC_0031/MR.MOCO_TRACOLINE_TEST.0031.0001.2021.01.13.12.54.51.790046.85818469.IMA /indirect/data1/hannah/Test/RESOLVE_3SCAN_TRACE_TRA_P2_160_ADC_0031.nii reading from /indirect/data1/hannah/Test/RESOLVE_3SCAN_TRACE_TRA_P2_160_ADC_0031/MR.MOCO_TRACOLINE_TEST.0031.0001.2021.01.13.12.54.51.790046.85818469.IMA... INFO: this looks like a dicom, not an old Siemens .ima file, so I'm going to unpack it as a dicom. If this fails, run mri_convert with -it dicom Getting Series No Scanning Directory INFO: Found 29 files in /indirect/data1/hannah/Test/RESOLVE_3SCAN_TRACE_TRA_P2_160_ADC_0031 INFO: Scanning for Series Number 31 INFO: found 27 files in series INFO: loading series header info. ERROR: GetSDCMFileInfo(): dcmGetDWIParams() 7 DICOM File: /indirect/data1/hannah/Test/RESOLVE_3SCAN_TRACE_TRA_P2_160_ADC_0031/MR.MOCO_TRACOLINE_TEST.0031.0001.2021.01.13.12.54.51.790046.85818469.IMA break /autofs/space/topaz_001/topaz_nightly_build/trunk/ah221-7.1.1/utils/DICOMRead.cpp:2639 ERROR: reading /indirect/data1/hannah/Test/RESOLVE_3SCAN_TRACE_TRA_P2_160_ADC_0031/MR.MOCO_TRACOLINE_TEST.0031.0001.2021.01.13.12.54.51.790046.85818469.IMA INFO: sorting. Segmentation fault (core dumped) Best regards,Hannah
Am 26.01.2021 04:23:58, schrieb Douglas N. Greve:
Can you send the full command line and terminal output?
> On 1/22/2021 4:29 AM, Hannah Eichhorn wrote:
> > >
> > External Email - Use Caution > > > > Dear all,> >
> > > > I am trying to convert Dicom volumes from a DWI Siemens sequence into nifty format, but I get the following error when I run the mri_convert Test.IMA Test.nii command:
> > > > > > ERROR: GetSDCMFileInfo(): dcmGetDWIParams() 7
> > > > DICOM File: Test.IMA
> > > > break /autofs/space/topaz_001/topaz_nightly_build/trunk/ah221-7.1.1/utils/DICOMRead.cpp:2639
> > > > ERROR: reading Test.IMA
> > > > INFO: sorting.
> > > > Segmentation fault (core dumped)
> > I have searched the mail archive and didn't find similar errors. Does anyone have any thoughts on how to solve this error?
> > I am using FreeSurfer version> > : freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551
> > Thank you,
> > Hannah Eichhorn
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