Thanks Lilla!
Just to be sure, when using the --mni flag, should I remove the --template flag?
Also, is there any way I can calculate the registration directly to MNI305 and not MNI152?
Thanks again,
Noam
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Lilla Zollei lzollei@nmr.mgh.harvard.edu Sent: Wednesday, August 1, 2018 8:35:49 AM To: Freesurfer support list Subject: Re: [Freesurfer] mri_cvs_register using fsaverage
Hi Noam,
Can you can use the --mni flag?
"Use the CVS atlas in MNI152 space as a target for registration (as opposed to the default CVS template)"
Lilla
On Wed, 1 Aug 2018, Peled, Noam wrote:
I need to transfer one of our patient's electrodes locations (depth electrodes, they aren't located on the cortical surface) to MNI305 space. For that, I'm trying to use mri_cvs_register to register the patient to fsaverage. I'm using to the following command:
mri_cvs_register --mov subjid --template fsaverage --outdir output_name --nocleanup
And I'm getting the following error: fsaverage : at least one mean and/or Gaussian curvature file is missing (.H, .K)
Indeed, fsaverage doesn't have the rh/lh.inflated.K/H files. Any ideas?
Thanks, Noam