Re: [Freesurfer] subcortical segmentation

Hi Abel,

yes, they will change the volume. You can manually correct them in the aseg.mgz if you want.

cheers, Bruce On Fri, 18 Apr 2008, abel cruz vadell wrote:

Hello

I’m doing a thalamus volumetric analysis between two populations and checking the thalamus segmentation I found some pixels classified as white matter hipointensities inside the thalamus. Do they affect the volume measure of this structure reported by FreeSurfer. In the positive case, how can I fix that problem? I attached an image.

Thanks

Abel

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