Yes, they do. You can edit the aseg.mgz and rerun. You probably only need to re-run the segstats part of the recon.

abel cruz vadell wrote:

Hello

I'm doing a thalamus volumetric analysis between two populations and checking the thalamus segmentation I found some pixels classified as white matter hipointensities inside the thalamus. Do they affect the volume measure of this structure reported by FreeSurfer. In the positive case, how can I fix that problem? I attached an image.

Thanks

Abel

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