I had no idea they had added the FreeSurfer thalamic nuclei; thanks a lot for the pointer!
Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of "Zeng, Victor (BIDMC - Keshavan - Psychiatry)" vzeng@bidmc.harvard.edu Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Thursday, July 9, 2020 at 10:07 To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] [External] The thalamic atlas in MNI space
You may be interested in https://www.oxcns.org/aal3.html%E2%80%8B AAL3, which has the estimations of the thalamus nucleis from fs6
Victor Zeng Beth Israel Deaconess Medical Center Keshavan Lab -- ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of 邹广源 zouguangyuan@pku.edu.cn Sent: Wednesday, July 8, 2020 8:45 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [External] [Freesurfer] The thalamic atlas in MNI space
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Dear experts
I am performing a fMRI analysis about the thalamus. I would like to see the overlap of my thalamic ROI with the atlas derived in 'A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology' (Iglesias, NeuroImage, 2018). Is there a version of this atlas in the MNI space? I found the 'ThalamicNuclei' folder in FreeSurfer but it seems not an atlas in the MNI space. I am new in FreeSurfer. Could you please give me some suggestions?
Thanks for your time.
Best,
Guangyuan Zou
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