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Hi,
That’s is great thank you I will check it out sorry I think I gave you the wrong scripts here is a different one from this year fi this would make anymore sense thankyou! 😊
Best wishes
Samantha
From: fsbuild fsbuild@contbay.com Sent: 10 July 2025 22:16 To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Re: Freesurfer output. Segmentation fault (core dumped) during parcellation step
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This posting indicates that changing the path to ./stats from ../stats got rid of a segmentation fault. I would at least check that all paths in the arguments ro mris_anatomical_stats are correct though.
https://secure-web.cisco.com/1kII4TbCI49cZwwlOnHYFCUUaBglX8r7MQeqWDAa8DZ2GU4...
But I don’t see the error in the recon -all log you sent which is apparently from May 2020 showing Freesurfer 6.0.0 is being run on RedHat Enterprise Linux 7.5.
- R.
On Jul 10, 2025, at 16:24, Samantha Hendry <shendry2@ed.ac.ukmailto:shendry2@ed.ac.uk> wrote:
mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab FMS_0094 lh white
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