Hi Alice, I would check out whether autocorrection of the defects in that area were done properly. You create a segmentation of the defects with defect-seg. It might not be in 5.0, so I've attached it. It might not work properly in 5.0. If so, you'll have to download 5.2 (you can have two different versions at the same time, just make sure to only run defect-seg from 5.2). doug
On 03/17/2013 09:16 PM, Alice Burnett wrote:
Hi FreeSurfer experts,
I have been working with a dataset we have run through FreeSurfer 5.0 and am interested in the medial orbitofrontal region (Desikan atlas). We have an unexpected surface area finding, so we want to rule out any systematic error in the generation of the area measurements. We followed the wiki instructions for processing and checked and edited all images as necessary, so the pial and white surface placement looks OK. I'm wondering, would you have any particular recommendations for QA checking the mOFC or things we should be looking out for?
Thanks so much! Alice
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