Dear Bruce, In PialEdit_tktools http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/PialEdits_tktools, it say this: recon-all -autorecon-pial -subjid pial_edits_before .So I didnot know whether the "-autorecon-pial" option "-autorecon2-pial" option I can run. Would you please tell me which one I should use? Thanks. All the best.
2013-12-10
Rujing Zha
发件人：Bruce Fischl fischl@nmr.mgh.harvard.edu 发送时间：2013-12-10 21:17 主题：Re: [Freesurfer] after PialEdit_tktools 收件人："Rujing Zha"zharj@mail.ustc.edu.cn 抄送："freesurfer"freesurfer@nmr.mgh.harvard.edu
Hi Rujing,
yes, you should run -autorecon2-pial -autorecon3
cheers Bruce On Tue, 10 Dec 2013, Rujing Zha wrote:
Dear all, I run "recon-all -autorecon-pial -s subjects" after editing the pial by PialEdit_tktools. However I only find "-autorecon2-pial" option in recon-all manual. So I donot know whether I should run the "recon-all -s subjects -autorecon3" to complete all the 31 stages? Thanks. All the best.
2013-12-10
Rujing Zha School of Life Science
University of Science and Technology of China
E-mail:
zharj@mail.ustc.edu.cn
charujing@gmail.com
charujing123@163.com
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