Re: [Freesurfer] vol2subfield single time course from multiple regions

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Please, could you check the command line. I suspect that an error is there. Thanks. Stefano

mri_binarize --i ThalamicNuclei.v10.T1.mgz --replace-only 8130 8133 --o Left-Ventroposterior.mgz

Il 30 aprile 2020 alle 18.51 "Douglas N. Greve" dgreve@mgh.harvard.edu ha scritto:

You can use mri_binarize --i ThalamicNuclei.v10.T1.mgz --replace-only segid segidreplace ... --o newseg.mgz
to create a new segmentation with merged segments, then using vol2subfield with the newseg seg as --sf

On 4/29/2020 7:57 PM, stdp82@virgilio.it mailto:stdp82@virgilio.it wrote:

    > > 

...

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    Hi list,

    vol2subfield --i fmcpr.nii.gz --reg register.dof6.lta --sf ThalamicNuclei.v10.T1.mgz --stats stats.dat --avgwf avgwf.dat --avgwfvol avgwfvol.mgz --o f2subf.nii.gz

    extracts the time course from each thalamic subregions.

    If I would like to merge multiple regions (e.g. --id 8115 --id 8116) and extract a single time course from them, which is the way?

    Thanks


    Stefano



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