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Dear FreeSurfer Experts,
Version: FreeSurfer 7.0 Platform: Bash remotely through High Performance Computing (HPC) on a MacOS Mojave
We are trying to run recon-all on T1 images but the job stops with the following error:
Reading annotation /rds/general/project/imperialapc/live/freesurfer/APC001/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Seg base 1000 error: Permission denied error: CTABwriteFileASCII(/tmp/mri_segstats.tmp.APC001.lh.176.ctab): could not open for writing
Could you please help us figuring out where is the problem? I am attaching the script we are running and the recon-all log for one of our analysed subjects.
Thank you for your help. Kind regards, Flavia