14 Sep
2016
14 Sep
'16
10:38 a.m.
not sure, maybe one of the HCP folks could weigh in. You might try converting the lh.nii.gz to mgh file first. Should not make a difference, but it might
On 9/14/16 10:24 AM, Sabin Khadka wrote:
Doug- I did try mris_convert -o $SUBJECTS_DIR/FSsub/surf/lh.white $SUBJECTS_DIR/sub/REST/bold/001/fmcpr.odd.sm5.fsaverage.lh.nii.gz fmcpr.lh.gifit-file.gii
I still get freadFloat: frear failed error.
On separate note: Is is possible to convert these FSFAST generated files (fmcpr.odd.sm5.fsaverage.?h.nii.gz and fmcpr.odd.sm5.mni305.2mm.nii.gz) into CIFTI format?
-Sabin
On Tue, Sep 13, 2016 at 3:09 PM Sabin Khadka <mr.sabinkhadka@gmail.com mailto:mr.sabinkhadka@gmail.com> wrote:
Hi Doug- I did try mris_convert -o $SUBJECTS_DIR/FSsub/surf/lh.white $SUBJECTS_DIR/sub/REST/bold/001/fmcpr.odd.sm5.fsaverage.lh.nii.gz fmcpr.lh.gifit-file.gii I still get freadFloat: frear failed error. Cheers, Sabin Khadka On Tue, Sep 13, 2016 at 2:53 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote: what is your mris_convert command line? You need to include vertex position information (eg, -o lh.white) On 09/12/2016 03:32 PM, Sabin Khadka wrote: > Hi all, > > Is there a way to convert FSFAST files > (fmcpr.odd.sm5.fsaverage.?h.nii.gz) files to convert into gifti > format? I've tried mris_convert but it does not work. > > Thanks for help. > > Cheers, > Sabin Khadka > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> Phone Number: 617-724-2358 <tel:617-724-2358> Fax: 617-726-7422 <tel:617-726-7422> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.