Dear Shizuka, You can run the script “run segmentHA_T1_long.sh” with what you already have ;-) Cheers, /Eugenio
Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Shizuka Hayashi s.hayashi@student.unsw.edu.au Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Tuesday, March 23, 2021 at 07:31 To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] longitudinal hippocampal subfield
External Email - Use Caution Dear Freesurfer team,
I'm studying in longitudinal hippocampal changes. Currently I have output from recon-all with T1 and T2-FLAIR across each subject for each time point and output from the longitudinal pipeline for each subject. Now, I want to run the longitudinal hippocampal subfield but the documentation states that it is for T1 scans only. Can I run segmentHA_T1_long.sh with above output or do I need to rerun all above process with only T1 scans.
Thank you.
Best regards, Shizuka