Hi Bruce,
The nu.mgz file looks OK to me (I also attached a picture). When I opened the talairach with "tkregister2" everything looked ok, except I couldn't get the green lines from the original surface to show (even after pressing 's' in the viewing window). Anyways, since these two files seem to be OK, do you think it is an atlas issue?
Thank you!
- MP
On Thu, Jan 16, 2014 at 7:36 PM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
Hi Mark
does the input to mri_ca_normalize look ok (the nu.mgz)? Is the talairach.xfm ok?
Bruce
On Thu, 16 Jan 2014, Mark Plantz wrote:
Hello freesurfers,
I am running into a problem during the "CA Normalize" sequence ofautorecon-2. It looks like freesurfer is having a hard time creating control points based off the atlas I am using. The output is as follows:
"finding control points in <Left_Cerebral_White_Matter>...found 0 control points"
This repeated for the other various regions included in the atlas.The only control points found were "168 control points" in the "Right_Cerebral_White_Matter". Could this possibly be an alignment issue? If so, is there an easy way to check the alignment?
Thank you,
Mark
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