Thank you very much. In fact, I want to insert the bet module before calculating the tensor, eigvals, eigvecs, fa, ra etc in dt_recon. I also know mri_glmfit can create glm-related images. But I can't find the tensor calculation in (mri_glmfit --y $fec --glmdir $OutDir --dti $bvals $bvecs).
On Tue, Jul 7, 2009 at 12:36 AM, Douglas N Greve greve@nmr.mgh.harvard.eduwrote:
It just takes the log of the input and constructs a design matrix from your bvals and bvecs, then fits a glm.
doug
?? wrote:
Hi, All. The related item of "Fitting Tensors" is listed from the dt_recon.
# Fit tensors echo "#@#-------------------------------" | tee -a $LF echo "Fitting Tensors" | tee -a $LF date | tee -a $LF
set cmd = (mri_glmfit --y $fec --glmdir $OutDir); if($#bvals == 0) then set cmd = ($cmd --dti $infodump) else set cmd = ($cmd --dti $bvals $bvecs) endif
However, I can't find any description about this argument(--dti) in mri_glmfit. Did the mri_glmfit call the dtifit to fit the tensor from fsl?If not, what is it?
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