Using FreeSurfer just for Skull Striping is like killing an ant with an MP5 :)
Are you sure you just want to skull strip?
2009/11/3 Ribes Delphine delphine.ribes@epfl.ch
Dear Users,
I've just started using FreeSurfer. I would like to use it for skull-stripping.
I've created a batch file to process all my subjects. and I am basically using the command line:
recon-all -autorecon1 -skullstrip -s subj1
I would like to know if there is a way to only do skull-stripping and not doing the Talairach Transform and then INU correction?
I would like to have the skulll-stripp volume in the same space coordinate as originally?
Otherwise, I am doing skull-stripping of T1 weighted images of normal elderly subejcts. Is there any specific recommandation for skull-stripping parameters?
Thanks a lot, Delphine
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