Thanks for the clarification, I'm asking that because in the mri_cvs_register docs it's written that the --mni flag will "use the CVS atlas in MNI152 space as a target for registration".
Thanks again,
Noam
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edu Sent: Wednesday, August 1, 2018 11:19:16 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_cvs_register using fsaverage
FYI, fsaverage is already in MNI305 space
On 08/01/2018 11:14 AM, Peled, Noam wrote:
Thanks Lilla!
Just to be sure, when using the --mni flag, should I remove the --template flag?
Also, is there any way I can calculate the registration directly to MNI305 and not MNI152?
Thanks again,
Noam
*From:* freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Lilla Zollei lzollei@nmr.mgh.harvard.edu *Sent:* Wednesday, August 1, 2018 8:35:49 AM *To:* Freesurfer support list *Subject:* Re: [Freesurfer] mri_cvs_register using fsaverage
Hi Noam,
Can you can use the --mni flag?
"Use the CVS atlas in MNI152 space as a target for registration (as opposed to the default CVS template)"
Lilla
On Wed, 1 Aug 2018, Peled, Noam wrote:
I need to transfer one of our patient's electrodes locations (depth
electrodes, they aren't located on the cortical surface) to MNI305 space.
For that, I'm trying to use mri_cvs_register to register the patient
to fsaverage. I'm using to the following command:
mri_cvs_register --mov subjid --template fsaverage --outdir
output_name --nocleanup
And I'm getting the following error: fsaverage : at least one mean and/or Gaussian curvature file is
missing (.H, .K)
Indeed, fsaverage doesn't have the rh/lh.inflated.K/H files. Any ideas?
Thanks, Noam
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