Mike,
Hi, a new mris_convert I’ve posted to the ftp site corrects this problem. It will now store the volume geometry info into two giiCoordSys structs, which an updated freeview will be able to read. mris_convert is here:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/
and the newest freeview.bin, updated daily, is here:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/freeview/
Nick
On May 22, 2014, at 11:38 PM, Harms, Michael mharms@WUSTL.EDU wrote:
Hi, I converted a surface to GIFTI e.g., mris_convert lh.white lh.white.gii
lh.white and lh.white.gii align when they are both loaded in 'tkmedit'. However, they do not align when loaded simultaneously in 'freeview'.
Of possible relevance: When I loaded lh.white.gii into 'freeview', I got the following message in the terminal: "Did not find any volume geometry information in the surface"
Is this possibly a bug of some sort in the display of GIFTI surfaces within 'freeview'?
This was all done with FS 5.3.
thanks, -MH
-- Michael Harms, Ph.D.
Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: mharms@wustl.edu
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