Thank you Martin.
Turns out that our cluster had crashed and killed the task due to hard drive space limitations. Its all fixed now and have been able to go through the tutorial at http://ftp.nmr.mgh.harvard.edu/fswiki/FsTutorial/LongitudinalTutorial for a single subject with 3 time points. One question that I have is what is the color key for the 3D images viewed in freeview or tksurf? My subject has some yellow, red, blue, gray areas, with the majority of the brain being light blue. I just wanted to make sure I understood exactly what the data is actually depicting.
Best wishes,
Sal
On Thu, Jul 4, 2013 at 8:16 AM, Martin Reuter mreuter@nmr.mgh.harvard.eduwrote:
Hi Sal,
not sure why the nu correction is crashing for you.
can you check how the FS/RZ_1484_POST_FS.long.RZ_1484_Base/mri/orig.mgz and rawavg.mgz look? Also make sure the talariach.xfm is correct in the template (base).
Next time please send the recon-all.log file (from the subject's scripts directory). It gives us more information than just the screen output.
Best, Martin
On Jul 4, 2013, at 1:17 AM, Salil Soman salsoman@stanford.edu wrote:
Hi,
I have been trying to run the FS longitudinal analysis on a subject with 3 time points. I ran each time point thourgh FS, made the template, but when I run the last step I do not get mri/norm files and the output files state nu_evaluate: crashed while running mincmath (termination status = 768), see attached log. Any suggestions on what I am doing incorrectly?
Best wishes,
Sal
Salil Soman, MD, MS <RZ_1484_LONG_POST.o893489>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Dr. Martin Reuter Assistant in Neuroscience - Massachusetts General Hospital Instructor in Neurology - Harvard Medical School MGH / HMS / MIT
A.A.Martinos Center for Biomedical Imaging 149 Thirteenth Street, Suite 2301 Charlestown, MA 02129
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