Hello everyone,
I am trying to extract clusters showing significant correlation between LGI and a behavioral measure. I am able to extract PCC and sig.mgh but at the last step when I try to run simulation command to view corrected results and I run:
mri_glmfit-sim --glmdir lh.MEQ_LGI.glmdir --cache 4 neg --cwp 0.05 --2spaces
I get following error:
ERROR: cannot find /usr/local/freesurfer/average/mult-comp-cor/fsaverage/lh/cortex/fwhm35/neg/th40/mc-z.csd
But I can see mc-z.csd file in fwhm30 etc.
Full message on terminal window is attached following.
Any help would be really appreciated.
----- Full message ----
cmdline mri_glmfit.bin --y lh.MEQ_LGI.10.mgh --fsgd MEQ.fsgd dods --C Corr-MEQ-cor.mtx --surf fsaverage lh --cortex --glmdir lh.MEQ_LGI.glmdir
WARNING: unrecognized mri_glmfit cmd option mri_glmfit.bin
SURFACE: fsaverage lh
log file is lh.MEQ_LGI.glmdir/cache.mri_glmfit-sim.log
/usr/local/freesurfer/bin/mri_glmfit-sim
--glmdir lh.MEQ_LGI.glmdir --cache 4 neg --cwp 0.05 --2spaces
$Id: mri_glmfit-sim,v 1.60 2016/04/30 15:13:36 greve Exp $
Mon Mar 6 11:11:13 MST 2017
setenv SUBJECTS_DIR /data/emot/Freesurfer/FreeSurferSegmentation/SB_AgingAll
FREESURFER_HOME /usr/local/freesurfer
Original mri_glmfit command line:
cmdline mri_glmfit.bin --y lh.MEQ_LGI.10.mgh --fsgd MEQ.fsgd dods --C Corr-MEQ-cor.mtx --surf fsaverage lh --cortex --glmdir lh.MEQ_LGI.glmdir
DoSim = 0
UseCache = 1
DoPoll = 0
DoPBSubmit = 0
DoBackground = 0
DiagCluster = 0
gd2mtx = dods
fwhm = 35.073391
ERROR: cannot find /usr/local/freesurfer/average/mult-comp-cor/fsaverage/lh/cortex/fwhm35/neg/th40/mc-z.csd