External Email - Use Caution
And the El Capitan dev is now fixed, too! Thanks to Andrew Hoopes for this.
-- Juan Eugenio Iglesias ERC Senior Research Fellow Centre for Medical Image Computing (CMIC) University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/
From: "Iglesias Gonzalez, Eugenio" e.iglesias@ucl.ac.uk Date: Friday, 1 June 2018 at 00:30 To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: Problem in subfields development version (T2 mode)
Dear all,
The problem should be fixed in the Linux builds. The MAC update will come in the next couple of days.
Apologies again for the inconvenience.
/Eugenio
Juan Eugenio Iglesias
Centre for Medical Image Computing (CMIC)
University College London
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Lachlan Strike l.strike1@uq.edu.au Sent: Wednesday, May 30, 2018 7:31 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Subfields Development Version MATLAB:scriptNotAFunction
External Email - Use Caution
Hi
I’m attempting to run the hippocampal/amygdala subfields segmentation in the most recent daily build of FreeSurfer (Centos7). The T1 only and multispectral variations run fine, but attempting the segmentation without the T1 (USE_T1=0) produces the following error:
Attempt to execute SCRIPT segmentSubjectT2_autoEstimateAlveusML as a function:
/tmp/MCR_3555778206/.mcrCache8.4/segmen0/segmentSubje/segmentSubjectT2_autoEstimateAlveusML.m
MATLAB:scriptNotAFunction
Error:Attempt to execute SCRIPT segmentSubjectT2_autoEstimateAlveusML as a function:
/tmp/MCR_3555778206/.mcrCache8.4/segmen0/segmentSubje/segmentSubjectT2_autoEstimateAlveusML.m
Linux vagrant 4.4.0-75-generic #96-Ubuntu SMP Thu Apr 20 09:56:33 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
Any ideas? I am running this within a singularity container, but as the T1 and multispec versions ran without error I’m hoping it’s not related to that.
Thanks
Lachlan
Queensland Brain Institute
The University of Queensland, Australia