External Email - Use Caution
Hello FreeSurfer Develops,
I'm attempting to run recon-all on two single subject with T1.
However, I got the following error message for subject respectively:
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ERROR : mri_ca_register with non-zero status 15
but continuing despite the error
...
ERROR : cannot find or read transform/talairach.m3z
I have attached the recon-all.log in case it's of any use.
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my commend code
#!/bin/bash #SBATCH -N 1 # Number of Nodes required #SBATCH -c 8 # Number of threads #SBATCH -t 0-10:00:00 # Amount of time needed DD-HH:MM:SS #SBATCH -p shared # Partition to submit to #SBATCH --mem-per-cpu=8GB #Memory per cpu export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK module load freesurfer export FS_LICENSE=$HOME/license.txt export SUBJECTS_DIR=~/DWKIM/T1/00sample recon-all -i s3001.nii -s s3001 -parallel -openmp 8 -all -qcache
================================================================== FreeSurfer Version : freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c Platform : CentOS Linux ver.7 uname -a : Linux holylogin04.rc.fas.harvard.edu 3.10.0-1160.36.2.e17.x86_64 #1 SMP Wed Jul 21 11:57:15 UTC 2021 x86_64 x86 64 x86_64 GNU/Linux