External Email - Use Caution
Hello FreeSurfer Develops,
I'm attempting to run recon-all on two single subject with T1.
However, I got the following error message for subject respectively:
================================================================
ERROR : mri_ca_register with non-zero status 15
but continuing despite the error
...
ERROR : cannot find or read transform/talairach.m3z
I have attached the recon-all.log in case it's of any use.
=================================================================
my commend code
#!/bin/bash #SBATCH -N 1 # Number of Nodes required #SBATCH -c 8 # Number of threads #SBATCH -t 0-10:00:00 # Amount of time needed DD-HH:MM:SS #SBATCH -p shared # Partition to submit to #SBATCH --mem-per-cpu=8GB #Memory per cpu export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK module load freesurfer export FS_LICENSE=$HOME/license.txt export SUBJECTS_DIR=~/DWKIM/T1/00sample recon-all -i s3001.nii -s s3001 -parallel -openmp 8 -all -qcache
================================================================== FreeSurfer Version : freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c Platform : CentOS Linux ver.7 uname -a : Linux holylogin04.rc.fas.harvard.edu 3.10.0-1160.36.2.e17.x86_64 #1 SMP Wed Jul 21 11:57:15 UTC 2021 x86_64 x86 64 x86_64 GNU/Linux
Can you send the recon-all.log file?
On 6/21/2022 6:44 AM, 김다운 wrote:
External Email - Use Caution
Hello FreeSurfer Develops, I'm attempting to run recon-all on two single subject with T1. However, I got the following error message for subject respectively: ================================================================ ERROR : mri_ca_register with non-zero status 15 but continuing despite the error ... ERROR : cannot find or read transform/talairach.m3z I have attached the recon-all.log in case it's of any use. ================================================================= my commend code #!/bin/bash #SBATCH -N 1 # Number of Nodes required #SBATCH -c 8 # Number of threads #SBATCH -t 0-10:00:00 # Amount of time needed DD-HH:MM:SS #SBATCH -p shared # Partition to submit to #SBATCH --mem-per-cpu=8GB #Memory per cpu export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK module load freesurfer export FS_LICENSE=$HOME/license.txt export SUBJECTS_DIR=~/DWKIM/T1/00sample recon-all -i s3001.nii -s s3001 -parallel -openmp 8 -all -qcache ================================================================== FreeSurfer Version : freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c Platform : CentOS Linux ver.7 uname -a : Linux holylogin04.rc.fas.harvard.edu 3.10.0-1160.36.2.e17.x86_64 #1 SMP Wed Jul 21 11:57:15 UTC 2021 x86_64 x86 64 x86_64 GNU/Linux
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
this is my recon-all.log file
thnx. ________________________________ 보낸 사람: Douglas N. Greve dgreve@MGH.HARVARD.EDU 대신 freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu 보낸 날짜: 2022년 6월 24일 금요일 오후 11:31 받는 사람: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu 제목: Re: [Freesurfer] ERROR : mri_ca_register with non-zero status 15
Can you send the recon-all.log file?
On 6/21/2022 6:44 AM, 김다운 wrote:
External Email - Use Caution
Hello FreeSurfer Develops,
I'm attempting to run recon-all on two single subject with T1.
However, I got the following error message for subject respectively:
================================================================
ERROR : mri_ca_register with non-zero status 15
but continuing despite the error
...
ERROR : cannot find or read transform/talairach.m3z
I have attached the recon-all.log in case it's of any use.
=================================================================
my commend code
#!/bin/bash #SBATCH -N 1 # Number of Nodes required #SBATCH -c 8 # Number of threads #SBATCH -t 0-10:00:00 # Amount of time needed DD-HH:MM:SS #SBATCH -p shared # Partition to submit to #SBATCH --mem-per-cpu=8GB #Memory per cpu export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK module load freesurfer export FS_LICENSE=$HOME/license.txt export SUBJECTS_DIR=~/DWKIM/T1/00sample recon-all -i s3001.nii -s s3001 -parallel -openmp 8 -all -qcache
================================================================== FreeSurfer Version : freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
Platform : CentOS Linux ver.7 uname -a : Linux holylogin04.rc.fas.harvard.edu 3.10.0-1160.36.2.e17.x86_64 #1 SMP Wed Jul 21 11:57:15 UTC 2021 x86_64 x86 64 x86_64 GNU/Linux
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1VRtXYcjoQF3pi5jnyNzDB2ZyxEZ_UC90lVkfUoBCviK9gm...
You are using a development build from 20190911. Why? Please replicate with one of the officially released versions of FS. We do not recommend using development versions expcept in very special cases.
On 6/24/2022 10:33 AM, 김다운 wrote:
External Email - Use Caution
this is my recon-all.log file
thnx.
*보낸 사람:* Douglas N. Greve dgreve@MGH.HARVARD.EDU 대신 freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu *보낸 날짜:* 2022년 6월 24일 금요일 오후 11:31 *받는 사람:* freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu *제목:* Re: [Freesurfer] ERROR : mri_ca_register with non-zero status 15 Can you send the recon-all.log file?
On 6/21/2022 6:44 AM, 김다운 wrote:
External Email - Use Caution
Hello FreeSurfer Develops, I'm attempting to run recon-all on two single subject with T1. However, I got the following error message for subject respectively: ================================================================ ERROR : mri_ca_register with non-zero status 15 but continuing despite the error ... ERROR : cannot find or read transform/talairach.m3z I have attached the recon-all.log in case it's of any use. ================================================================= my commend code #!/bin/bash #SBATCH -N 1 # Number of Nodes required #SBATCH -c 8 # Number of threads #SBATCH -t 0-10:00:00 # Amount of time needed DD-HH:MM:SS #SBATCH -p shared # Partition to submit to #SBATCH --mem-per-cpu=8GB #Memory per cpu export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK module load freesurfer export FS_LICENSE=$HOME/license.txt export SUBJECTS_DIR=~/DWKIM/T1/00sample recon-all -i s3001.nii -s s3001 -parallel -openmp 8 -all -qcache ================================================================== FreeSurfer Version : freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c Platform : CentOS Linux ver.7 uname -a : Linux holylogin04.rc.fas.harvard.edu 3.10.0-1160.36.2.e17.x86_64 #1 SMP Wed Jul 21 11:57:15 UTC 2021 x86_64 x86 64 x86_64 GNU/Linux
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://secure-web.cisco.com/1VRtXYcjoQF3pi5jnyNzDB2ZyxEZ_UC90lVkfUoBCviK9gmXMqXuBafnwf2ex-wGplowGEnKU131yKVutnvQ21jmAiyokGy_8IaSWPL8NNgv2unDyBI2nm1sarFo4hPbErOiSsOSTgqQcXJmt6KjuMOVFNiB1lWMDFC0fMlqbTgrAdnzUrR4dMXCL5MXmQIGaIYBQ4_ipKT3oes37GcC-aBCJC4XtE4Zr-6xaqTxoJEskK3UGOS8eZEJDcuu_Aod3HH1LAS1BfmIIJ_L403n0k4bC9polnV0iAwTtZ3PGCKLUEQF4_0GCpZzdOjUFir9ACAh76v1lZ-GOLSkhpP4RoQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Douglas N. Greve -
김다운