[Freesurfer] WM hypointensities and corpus callosum mislabeling

Hello,

In a number of our subjects I've been finding white matter hypointensities around the anterior edge of the caudate, as well as mislabelings of the corpus callosum as cerebral white matter (at and/or around slice 128, sagittal). Has anyone else encountered these problems, and are there fixes that don't involve manually doctoring the mislabelings (such as setting a particular flag for recon)?

I am quite new to FS so please forgive any rudimentary misunderstandings.

Thank you!

Warren

-- Warren Winter Lab Coordinator Children's Hospital Boston Division of Developmental Medicine 1 Autumn Street, AU 650 Boston, MA 02215 857-218-5224